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Publications by CGIAR genebank staff

Published in 2018

Recent publications with at least one CGIAR genebank staff as author. HINT: Use the search key to filter the data.
Institute Authors Article title Publication name URL
AfricaRice Cubry, P., Tranchant-Dubreuil, C., Thuillet, A.-C., Monat C., Ndjiondjop, M.-N., Labadie, K., Cruaud, C., Engelen, S., Scarcelli, N., Rhoné, B., Burgarella, C., Dupuy, C., Larmande, P., Wincker, P., François, O., Sabot, F., Vigouroux, Y. The rise and fall of African rice cultivation revealed by analysis of 246 new genomes. Current Biology READ
AfricaRice Lv, S., Wu, W., Wang, M., Meyer, R.S., Ndjiondjop, M.-N., Tan, L., Zhou, H., Zhang, J., Fu, Y., Cai, H., Sun, C., Wing, R.A., Zhu, Z. Genetic control of seed shattering during African rice domestication. Nature Plant READ
AfricaRice Ndjiondjop, M.N., Alachiotis, N., Pavlidis, P., Goungoulou, A., Kpeki, S.B., Zhao, D., Semagn, K. Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice. Theoretical and Applied Genetics: International Journal of Plant Breeding Research READ
AfricaRice Ndjiondjop, M.N., Semagn, K., Sow, M., Manneh, B., Gouda,A.C., Kpeki, S.B., Pegalepo, E., Wambugu, P., Sie, M., Warburton, M.L. Assessment of genetic variation and population structure of diverse rice genotypes adapted to lowland and upland ecologies in africa using SNPs. Frontiers in Plant Science READ
AfricaRice Ndjiondjop, M.N., Semagn, K., Zhang, J., Gouda, A.C., Kpeki, S.B., Goungoulou, A., Wambugu, P., Dramé, K.N., Bimpong, I.K., Zhao, D. Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species. Molecular breeding : new strategies in plant improvement READ
AfricaRice Shaibu, A.A., Uguru, M.I., Sow, M., Maji, A.T., Ndjiondjop, M.N., Venuprasad, R. Screening African rice (Oryza glaberrima) for tolerance to abiotic stresses: II lowland drought. Crop Science READ
AfricaRice Ndjiondjop, M.N., Wambugu, P., Sangare, J., Gnikoua, K. The effects of drought on rice cultivation in sub-Saharan Africa and its mitigation: A review. African Journal of Agricultural Research READ
AfricaRice Ndjiondjop, M.N., Alachiotis, N., Pavlidis, P. ,Goungoulou A, Kpeki SB., Zhao D, Semagn K Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice. Theoretical and Applied Genetics: International Journal of Plant Breeding Research READ
Bioversity Sinnesael, A., Eeckhout, S., Janssens, S., Smets,E., Panis, B., Verstraete, B. Detection of Burkholderia in the seeds of Psychotria punctata (Rubiaceae) – Microscopic evidence for vertical transmission in the leaf nodule symbiosis. PLoS One READ
Bioversity Ellis, D., Escobar, R., Gueye, B., Panis, B., Vollmer, R., Popova, E. Cryobanking clonal crops: When knowledge and practice are not the same. Cryobiology, Abstracts of CRYO2018 READ
Bioversity Němečková, A., Christelová, P., Čížková, J., Nyine, M., Van den houwe, I., Svačina, R., Uwimana, B., Swennen, R., Doležel, J. and Hribová, E. Molecular and cytogenetic study of east African highland banana. Frontiers of Plant Science READ
Bioversity Sardos, J., Christelová, P., Čížková, J., Paofa, J., Sachter-Smith, G. L., Janssens, S. B., Rauka, G. , Ruas, M. , Daniells, J. W.,Doležel, J.,Roux, N. Collection of new diversity of wild and cultivated bananas (Musa spp.) in the autonomous region of Bougainville, Papua New Guinea. Genetic Resources and Crop Evolution READ
Bioversity Rouard, M., Droc, G., Martin, G., Hueber, Y., Sardos, J., Guignon, V., Cenci, A., Geigle, B., Hibbins, M., Yahiaoui, N., Baurens, F., Berry, V., Hahn, M., D’Hont, A., Roux, N.  Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Genome Biology and Evolution READ
Bioversity Halewood, M., Lopez Noriega, I., Ellis, D., Roa, C., Rouard, M., Sackville Hamilton, R. Using genomic sequence information to increase conservation and sustainable use of crop diversity and benefit-sharing. Biopreservation and Biobanking READ
CIAT Debouck, D.G., Araya-Villalobos, R., Chavez-Barrantes, N. Phaseolus angucianae (Leguminosae: Phaseoleae), a new bean species from Fila Cruces of Southeastern Costa Rica. Journal of the Botanical Research Institute of Texas READ
CIAT Jimenez, J., Carvajal-Yepes, M., Leiva, A.M., Cruz, M., Elena Romero, L., Bolaños, C.A., Lozano, I., Cuellar, W.J. Complete genome sequence of rice hoja blanca tenuivirus Isolated from a susceptible rice cultivar in Colombia. Microbiology Resource Announcements READ
CIMMYT Crespo-Herrera, L.A., Crossa, J., Huerta-Espino, J., Vargas, M., Mondal, S., Velu, G., Payne, T.S., Braun, H.J., Singh, R.P. Genetic gains for grain yield in CIMMYT’s semi-arid wheat yield trials grown in suboptimal environments. Crop Science READ
CIMMYT Sukhwinder-Singh Vikram, P., Sehgal, D., Burgueño, J., Sharma, A., Singh, S.K., Sansaloni, C.P., Joynson, R., Brabbs, T., Ortiz, C., Solís Moya, E., Velu, G., Gupta, N., Sidhu, H.S., Ashwani K. Basandrai, Basandrai, D., Ledesma-Ramires, L., Suaste-Franco, M.P., Fuentes Dávila, G., Ireta Moreno, J., Sonder, Kai, Vaibhav K. Singh, Singh, S., Sajid Shokat, Mian A.R. Arif, Khalil A. Laghari, Puja Srivastava, Bhavani, S., Satish Kumar, Dharam Pal, Jaiswal, J.P., Kumar, U., Harinder K. Chaudhary, Crossa, J., Payne, T.S., Imtiaz, M., Sohu, V.S., Gyanendra Pratap Singh, Bains, N., Hall, A.J.W., Pixley, K.V.. Harnessing genetic potential of wheat germplasm banks through impact-oriented-prebreeding for future food and nutritional security.  Scientific Reports READ
CIMMYT Morgounov, A.I.,Abugalieva, A.I.,Akan, K.,Akın, B.,Baenziger, S.,Bhatta, M.R.,Dababat, A.A.,Demir, L.,Dutbayev, Y.,Moustapha El Bouhssini,Erginbas-Orakci, G., Kishii, M.,Keser, M., Koc, E., Kurespek, A., Mujeeb-Kazi, A., Yorgancılar, A., Ozdemir, F., Ozturk, I., Payne, T.S., Qadimaliyeva, G., Shamanin, V., Subasi, K., Suleymanova, G., Yakisir, E., Zelenskiy, Y. High-yielding winter synthetic hexaploid wheats resistant to multiple diseases and pest. Plant Genetic Resources READ
CIMMYT Kumar, J., Saripalli, G., Gahlaut, V. et al.  Genetics of Fe, Zn, β-carotene, GPC and yield traits in bread wheat (Triticum aestivum L.) using multi-locus and multi-traits GWAS. Euphytica READ
CIMMYT Humberto Reyes-Valdes, M., Burgueno, J., Singh, S., Martinez, O., Paola Sansaloni, C. An informational view of accession rarity and allele specificity in germplasm banks for management and conservation. PLoS ONE READ
CIMMYT Gordon, E., Kaviani, M., Kagale, S., Payne, T., Navabi, A. Genetic diversity and population structure of synthetic hexaploid-derived wheat (Triticum aestivum L.) accessions. Genet Resour Crop Evol (2018).  READ
CIMMYT Contreras-Toledo, A. R., M. A. Cortés-Cruz, D. Costich, M. de Lourdes Rico-Arce, J. M. Brehm, and N. Maxted. A crop wild relative inventory for Mexico. Crop Science READ
CIP Vollmer, R., Villagaray, R., Castro, M, Anglin, N.L., Ellis, D. Cryopreserved potato shoot tips showed genotype-specific response to sucrose concentration in rewarming solution (RS). Plant Cell, Tissue and Organ Culture READ
CIP Ellis, D., Chavez, O., Coombs, J., Soto, J., Gomez, R., Douches, D., Panta, A., Silvestre, R., Anglin, N. Genetic identity in genebanks: application of the SolCAP 12K SNP array in fingerprinting and diversity analysis in the global in trust potato collection. Genome READ
CIP Kyriakidou, M., Tai, H.H., Anglin, N.L., Ellis, D., Stromvik, M.V. Current strategies of polyploid plant genome sequence assembly. Frontiers in Plant Science READ
CIP Ramirez, D., Yactayo, W., Rolando, J.L., Quiroz, R. Preliminary evidence of nocturnal transpiration and stomatal conductance in potato and their interaction with drought and yield. American Journal of Potato Research READ
CIP Muñoz-Rodriguez, P., Carruthers, T., Wood, J.R.I., Williams, B.R.M., Weitemier, K., Kronmiller, B., Ellis, D., Anglin, N.L., Longway, L., Harris, S.A., Rausher, M.D., Kelly, S., Liston, A., Scotland, R.W. Reconciling conflicting phylogenies in the origin of sweet potato and dispersal to Polynesia. Current Biology READ
CIP Herrera, M.R., Jara Vidalon, L., Montenegro, J.D., Riccio, C., Guzman, F.,Bartolini, I.,Ghislain, M. Molecular and genetic characterization of the Ry adg locus on chromosome XI from Andigena potatoes conferring extreme resistance to potato virus Y. Theoretical and Applied Genetics READ
CIP Sosa, P., Guild, G., Burgos, G., Bonierbale, M., Felde, T.zum. Potential and application of X-ray fluorescence spectrometry to estimate iron and zinc concentration in potato tubers. Journal of Food Composition and Analysis READ
CIP Quiroz, R., Ramírez, D.A., Kroschel, J., Andrade-Piedra, J.L., Barreda, C., Condori, B., Mares, V., Monneveux, P., Perez, W. Impact of climate change on the potato crop and biodiversity in its center of origin. Open Agriculture READ
CIP Souza, J. de, Gamarra, H., Muller, G., Kreuze, J. First report of potato virus S naturally infecting arracacha (Arracacia xanthorrhiza) in Peru. Plant Disease READ
ICARDA Anglin, N., Amri, A., Kehel, Z., Elis, D. A case of need: Linking traits to genebank accessions. Biopreservation and Biobanking READ
ICARDA Visioni, A., Kehel, Z. Genome wide association mapping of seedling and adult plant resistance to barley stripe rust (Puccinia striiformis f. sp. hordei) in India. Frontiers in Plant Science READ
ICARDA Hamwieh, A., F. Alo, S. Ahmed.  Molecular tools developed for disease resistant genes in wheat, barley, lentil and chickpea: A review. Arab Journal of Plant Protection READ
ICARDA Alo, F., Al-Saaid, W., Baum, M., Alatwani, H. and Amri, A. Slow rusting of bread wheat landraces to Puccinia striiformis f.sp. tritici under artificial field inoculation. Arab Journal of Plant Protection READ
ICARDA Alo, F., Alsaaid, W., Amri., A. Identification of molecular markers for the detection of yellow rust (Puccinia striiformis f. Sp. tritici) resistance genes in three bread wheat cultivar using molecular marker. Aleppo University Research Magazine READ
ICARDA Alo, F., Alsaaid, W., Amri., A. Evaluation of bread wheat landraces for resistance to yellow rust under artificial field inoculation. Aleppo University Research Magazine READ
ICARDA Soubra, N., Yazbek, M., Noun, J., Talhouk, R., Tanios, S., and Karam, N. Evaluation of diversity and conservation status of Matricaria chamomilla (L.) and Matricaria aurea (Loefl.) Sch. Bip. in Lebanon. J Biodivers Endanger Species READ
ICARDA Ben Ghanem, H., Najar, A., Udupa, S., Kumari, S.G., Amri, A., Rezgui, S., El Felah, M., Tsivelikas, A. Exploiting intra-cultivar variation to select for Barley yellow dwarf virus-PAV (BYDV-PAV) resistance in barley. Canadian Journal of Plant Science READ
ICARDA Ben Ghanem, H., El Felah, M., Najar, A., Kehel, Z., Amri, A., Rezgui, S., Tsivelikas, A. Performance of barley lines selected under drought stressed conditions and ultra-low density. Tunisian Journal of Plant Protection READ
ICARDA Lopez Noriega, I., Halewood, M., Abberton, M., Ajeigbe, H.; Amri, A., Angarawai, I., Anglin, N., Asiedu, R., Bänziger, M., Birol, E., Blummel, M., Boddupalli, M. P., Bouman, B., Campos, H., Carberry, P., Costich, D., Duveiller, E., Ellis, D., Falcon, R., Gangashetty, P., Gaur, P., Guarino, L., Hanson, J., Hugues, J., Jamnadass, R., Kommerell, V., Kumar, L., Lusty, C., Muchiga, A., Ndjiondjop, MN., Nebie, B., Ortiz, O., Payne, T., Peters, M., Popova, E., Randolph, T.F., Rao, G., Rao, H., Roa, C., Sackville-Hamilton, R., Saethre, M.G., Sara, R., Tabo, R., Tchamba, M., Upadhyaya, H., Watson, D., Yazbek, M. and Wenzl, P. CGIAR operations under the Plant Treaty framework. Crop Science READ
ICRAF Tata,H. L., Muchugi, A., Kariba, R., Van Noordwijk, M. Genetic diversity of Dyera polyphylla (Miq.) Steenis populations used in tropical peatland restoration in Indonesia. Mires and Peat READ
ICRAF Nyoka, B.I., Kamanga, R., Njoloma, J., Jamnadass, R., Mng'omba, S.A., Muwanje, S. Quality of tree seedlings produced in nurseries in Malawi: an assessment of morphological attributes. Forests, Trees and Livelihoods READ
ICRAF Muriira, N., Muchugi, A., Yu, A., Xu, J. C., Liu, A. Genetic diversity analysis reveals genetic differentiation and strong population structure in Calotropis plants. Scientific reports READ
ICRAF Chang, Y., Liu, H., Liu, M., Liao, X., Kumar Sahu, S., Fu, Y., Song, B., Cheng, S., Kariba, R., Muthemba, S., Hendre, P., Mayes, S., Kuan Ho, W., E.J. Yssel, A., Kendabie, P., Wang Linzhou Li, S., Muchugi, A., Jamnadass, R., Lu, H., Peng,S., Van Deynze, A., Simons, A., YanaShapiro, H.,Van de Peer, Y., Xu, X., Yang,H.,Wang, J., Liu, X. The draft genomes of five agriculturally important African orphan crops. Giga Science READ
ICRAF Cornelius, J.P., Pinedo-Ramírez, R., Sotelo Montes, C., Ugarte-Guerra, L.J., Weber, J.C. Efficiency of early selection in Calycophyllum spruceanum and Guazuma crinita, two fast-growing timber species of the Peruvian Amazon. Canadian Journal of Forest Research
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ICRAF Alain, T., Ebenezar, A., Roger, L., Zacharie, T., Van Damme, P., Daniel, O., Ramni, J. Effects of pre-severance irradiance on the growth of Allanblackia floribunda Oliv. stockplants and on the subsequent rooting capacity of leafy stem cuttings. Journal article (New Forests) READ
ICRAF Tiep, H.V., Thuong, H., Nguyen, L., Thi Lua, H. Van Thuan, V., Thi Kieu, L., Carsan, S., Degrande, A., Catacutan, D., Harwood, C. Domestication of Docynia indica in Vietnam. Forests, Trees and Livelihoods READ
ICRISAT Hamidou, F., Sani, A., Y Hassane, B., Falke, A., Upadhyaya, H.D Screening of chickpea accessions for resistance against the pulse beetle, Callosobruchus chinensis L. (Coleoptera: Bruchidae). Journal of Stored Products Research READ
ICRISAT Khedikar, Y., Pandey, M., Sujay, V., Singh, S., Nayak, S., Klein-Gebbinck, H., Sarvamangala, C., Mukri, G., Garg, V., Upadhyaya, H.,Nadaf, H. L., Gowda, M. V. C., Varshney, Bhat, R. Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding READ
ICRISAT Bab u, B., Sood, S., Kumar, D., Joshi, A., Pattanayak, A., Kant, L., Upadhyaya, H. D. Cross-genera transferability of rice and finger millet genomic SSRs to barnyard millet (Echinochloa spp.). 3 Biotech READ
ICRISAT Upadhyaya, H., Narsimha Reddy, K., Vetriventhan, M., Irshad Ahmed, M., Reddy, M. Latitudinal adaptation of flowering response to Photoperiod and temperature in the world collection of Sorghum landraces. Crop Science READ
ICRISAT Kumari, W.M.R., Pushpakumara, D.K.N.G., Weerakoon, W.M.W., Senanayake, D.M.J.B., Upadhyaya, H.D. Morphological characterization of local and introduced finger millet (Elusine coracana (L.) Gaertn) germplasm in Sri Lanka. Tropical Agricultural Research READ
ICRISAT Vetriventhan, M., Upadhyaya, H. Diversity and trait-specific sources for productivity and nutritional traits in the global proso millet (Panicum miliaceum L.) germplasm collection. The Crop Journal READ
ICRISAT Bhagyawant, S., Gautam, A., Narvekar, D., Gupta, N., Bhadkaria, Nidhi Srivastava, Hari D. Upadhyaya Biochemical diversity evaluation in chickpea accessions employing mini-core collection. Physiology and Molecular Biology of Plants READ
ICRISAT Basu, U., Bajaj, D., Sharma, A., Malik, N., Daware, A., Narnoliya, L., Thakro, V., Upadhyaya, H., Kumar, R., Tripathi, S., Bharadwaj, C., Tyagi, A., Parida, S. Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea. Plant Cell Environment READ
ICRISAT Opole, R. A. , Prasad, P. V. V., Djanaguiraman, M., Vimala, K., Kirkham, M. B., Upadhyaya, H. D. Thresholds, sensitive stages and genetic variability of finger millet to high temperature stress. Journal of Agronomy and Crop Science READ
ICRISAT Basu, U., Srivastava, R., Bajaj, D., Thakro, V., Daware, A., Malik, N., Upadhyaya, H., Parida S. Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea. Scientific Reports READ
ICRISAT Gaur, P., Varshney, R., Upadhyaya, H.D., Vadez, V., Sharma, K.K., Bhatnagar, P., Sameer Kumar, C.V., Janila, P., Srinivasan, S., Sajja, S., Sharma, S., Thudi, M., Roorkiwal, M., Saxena, R., Pandey, M., Rao, G.V., Sharma, M., Sudini, H., Gopalakrishnan, G., Ganga Rao, N.V.P.R., Fikre, A., Ojiewo, C., Shewayrga, H.,Motagi, B., Okori, P. Advances in food legumes research at ICRISAT. Ethiopian Journal of Crop Science READ
IITA onibare, M. A., I. O. Ayoola, B. Gueye, M. T. Abberton, R. D’Souza and N. Kuhnert Leaves metabolomic profiling of Musa acuminataaccessions using UPLC–QTOF–MS/MS and their antioxidant activity. Journal of Food Measurement and Characterization READ
IITA Lebot, V., Malapa, R., Abraham, K., Molisale, T., Van Kien, N., Gueye, B., Waki, J. Secondary metabolites content may clarify the traditional selection process. Genetic Resources and Crop Evolution READ
IITA Whitehouse, K.J., Owoborode, O.F., Adebayo,O.O., Oyatomi,O., Olaniyan,A., Abberton,M., Hay, F.R. Further evidence that the genebank standards for drying orthodox seeds. Biopreservation and Biobanking READ
IITA Fatokun, C., Girma, G., Abberton, M., Gedil,M., Unachukwu, N., Oyatomi, O., Yusuf, M. Rabbi, I.Y., Boukar, O. Genetic diversity and population structure of a mini-core subset. Scientific Reports READ
IITA Choudhary, N., Bawa, V., Paliwal, R., Singh, B., Bhat, M., Mir, J.I., Gupta, M., Sofi, P.A., Thudi, M., Varshney, R.K., Mir., R.R. Gene/QTL discovery for Anthracnose in common bean. PLoS-ONE READ
IITA Kumari, S., Jaiswal, V.,Kumar Mishra, V., Paliwal, R., Singh Balyan, H., Kumar Gupta., P. QTL mapping for some grain traits in bread wheat. Physiol Mol Biol Plants READ
ILRI Negawo, A.T., Jorge, A., Hanson, J., Teshome, A., Muktar, M.S., Azevedo, A.L.S., Lédo, F.J.D.S., Machado, J.C., Jones, C.S. Molecular markers as a tool for germplasm acquisition to enhance the genetic diversity of a Napier grass (Pennisetum purpureum) collection. TROPICAL GRASSLANDS-FORRAJES TROPICALES READ
ILRI Kumar, A., Mulatu, F., Assefa, Y., Hanson, J., Jones, C.S., First report of Johnsongrass mosaic virus infecting Urochloa mosambicensis in Ethiopia. Plant Disease READ
ILRI Kuwi, S.O., Kyalo, M., Mutai, C.K., Mwilawa, A., Hanson, J., Djikeng, A., Ghimire S.R. Genetic diversity and population structure of Urochloa grass accessions from Tanzania using simple sequence repeat (SSR) markers. Brazilian Journal of Botany READ
ILRI Ellis, R.H., Nasehzadeh, M., Hanson, J., Woldemariam, Y. Medium-term seed storage of 50 genera of forage legumes and evidence-based genebank monitoring intervals. Genetic Resources and Crop Evolution READ
IRRI Halewood, M., Chiurugwi, T., Sackville Hamilton, R., Kurtz, B., Marden, E., Welch, E., Michiels, F., Mozafari, J., Sabran, M. ,Patron, N., Kersey, P., Bastow, R., Dorius, S., Dias, S,. McCouch, S., Powell, W. Tansley review: Plant genetic resources for food and agriculture: opportunities and challenges emerging from the science and information technology revolution. New Phytologist READ
IRRI Halewood, M., Lopez Noriega, I., Ellis, D., Roa, C., Rouard, M., Sackville Hamilton, R. Using Genomic sequence information to increase conservation and sustainable use of crop diversity and benefit-sharing. Biopreservation and Biobanking READ
IRRI Norton, G.J., Travis , A.J., Douglas, A., Fairley, S., De Paiva Alves, E., Naredo, E., McNally, K.L., Sumon, M., Islam, R., Price, A.H. Genome wide association mapping of grain and straw biomass traits in the rice Bengal and Assam Aus Panel (BAAP) grown under alternate wetting and drying and permanently flooded irrigation. Frontiers in Plant Science READ
IRRI Wang, D., Agosto-Perez, F., Chebotarov, D., Shi, Y., Marchini, J., Fitzgerald, M., McNally, K.L., Alexandrov, A., McCouch, S.R. An imputation platform to enhance integration of rice genetic resources. Nature Communications READ
IRRI Wang, W.S., Mauleon, R., Hu, Z.Q., Chebotarov ,D., Tai, S.S., Wu, Z.C., Li, M., Zheng, T.Q., Fuentes, R.R., Zhang, F., Mansueto, L., Copetti, D., Sanciangco, M., Palis, K.C., Xu, J.L., Chen, S., Fu, B.Y., Zhang, H.L., Gao, Y.M., Zhao, X.Q., Shen, F., Cui, X., Yu, H., Li, Z.C., Chen, M.L., Detras, J., Zhou, Y.L., Zhang, X.Y., Zhao, Y., Kudrna, D., Wang, C.C., Li, R., Jia, B., Lu, J.Y., He, X.C., Dong, Z.T., Xu, J.B., Li, Y.H., Wang, M., Shi, J.X., Li, J., Zhang, D.B., Lee , S.H., Hu, W.S., Poliakov, A., Dubchak, I., Ulat, V.J., Borja, F.N., Mendoza, J.R., Al, J., Li, J., Gao, Q., Niu, Y.C., Yue, Z., Naredo, M.E.B., Talag, J., Wang, X.Q., Li, J.J., Fang, X.D., Yin, Y., Glaszmann, J.C., Zhang, J.W., Li, J.Y., Hamilton, R.S., Wing, R.A., Ruan, J., Zhang, G.Y., Wei, C.C., Alexandrov, N., McNally, K.L.*, Li, Z.K., Leung, H. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature READ
IRRI Scheben, A., Chan, C.K.K., Mansueto, L., Mauleon, R., Larmande, P., Alexandrov, N., Wing, R., McNally, K.L., Quesneville, H., Edwards, D. Comparing progress in single-access information systems for wheat and rice crop improvement. Briefings in Bioinformatics READ
IRRI Stein, J.C., Yu, Y.S., Copetti, D., Zwick, D.J., Zhang, L., Zhang, C.G., Chougule, K., Gao, D.Y., Iwata, A., Goicoechea, J.L., Wei, S., Wang, J., Liao, Y., Wang, M.H., Jacquemin, J., Becker, C., Kudrna, D., Zhang, J.W., Londono, C.E.M., Song, X., Lee, S.H., Sanchez, P., Zuccolo, A., Ammiraju, J.S.S., Talag, J., Danowitz, A., Rivera, L.F., Gschwend, A.R., Noutsos,C., Wu, C.C., Kao, S.M., Zeng, J.W., Wei, F.J., Zhao., Q., Feng, Q., E.L., Baidouri., M., Carpentier, M.C., Lasserre, E., Cooke., R., da Rosa Farias, D., da Maia, L.C., dos Santos, R.S., Nyberg, K.G., McNally, K.L., Mauleon, R., Alexandrov, N, Schmutz J, Flowers D, Fan CZ, Weigel D., Jena, K.K., Wicker, T., Chen, M.S., Han, B,, Henry, R., Hsing, Y.I.C., Kurata, N,, Costa de Oliveira, A., Panaud, O., Jackson, S.A., Machado, C.A., Sanderson, M.J., Long, M.Y., Ware, D., Wing, R.A. Genomes of 13 domesticated and wild rice relatives unveil genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics READ
IRRI Hay, F.R.,Valdez, R., Lee, J.S., Cruz, P.S. Seed longevity phenotyping: recommendations on research methodology. Journal of Experimental Botany READ
IRRI Lee, J.S., Wissuwa, M., Zamora, O.B., Ismail, A.M.  Novel sources of aus rice to zinc deficiency tolerance identified through association analysis using high- density SNP array. Rice Science READ
IRRI Timple, S.E., Hay, F.R. High-temperature drying of seeds of wild Oryza species intended for long-term storage. Seed Science and Technology READ

Published in 2017

Recent publications with at least one CGIAR genebank staff as author. HINT: Use the search key to filter the data.
Institute Authors Article title Publication name URL
AfricaRice Shaibu, A.A., Uguru, M.I., Sow, M., Maji, A.T., Ndjiondjop, M.N., Venuprasad, R. Screening African rice (Oryza glaberrima) for tolerance to abiotic stresses: II lowland drought. Crop Science READ
CIMMYT Contreras-Toledo, A. R., M. A. Cortés-Cruz, D. Costich, M. de Lourdes Rico-Arce, J. M. Brehm, and N. Maxted. A crop wild relative inventory for Mexico. Crop Science READ
CIP Ellis, D., Chavez, O., Coombs, J., Soto, J., Gomez, R., Douches, D., Panta, A., Silvestre, R., Anglin, N. Genetic identity in genebanks: application of the SolCAP 12K SNP array in fingerprinting and diversity analysis in the global in trust potato collection. Genome READ
ICARDA Ben Ghanem, H., Najar, A., Udupa, S., Kumari, S.G., Amri, A., Rezgui, S., El Felah, M., Tsivelikas, A. Exploiting intra-cultivar variation to select for Barley yellow dwarf virus-PAV (BYDV-PAV) resistance in barley. Canadian Journal of Plant Science READ
ICRAF Tata,H. L., Muchugi, A., Kariba, R., Van Noordwijk, M. Genetic diversity of Dyera polyphylla (Miq.) Steenis populations used in tropical peatland restoration in Indonesia. Mires and Peat READ
ICRAF Cornelius, J.P., Pinedo-Ramírez, R., Sotelo Montes, C., Ugarte-Guerra, L.J., Weber, J.C. Efficiency of early selection in Calycophyllum spruceanum and Guazuma crinita, two fast-growing timber species of the Peruvian Amazon. Canadian Journal of Forest Research
READ
ICRISAT Hamidou, F., Sani, A., Y Hassane, B., Falke, A., Upadhyaya, H.D Screening of chickpea accessions for resistance against the pulse beetle, Callosobruchus chinensis L. (Coleoptera: Bruchidae). Journal of Stored Products Research READ
ICRISAT Upadhyaya, H., Narsimha Reddy, K., Vetriventhan, M., Irshad Ahmed, M., Reddy, M. Latitudinal adaptation of flowering response to Photoperiod and temperature in the world collection of Sorghum landraces. Crop Science READ
IRRI Mansueto, L., Fuentes, R.R., Borja, F.N., Detras, J., Abriol-Santos, J.M., Dmytro Chebotarov, D., Millicent Sanciangco, M., Palis, K., Copetti, D., Poliakov, A., Dubchak, I., Solovyev, V., Wing, R.A., Sackville Hamilton, R., Mauleon, R., McNally, K.L., Alexandrov, N. Rice SNP-seek database update: new SNPs, indels, and queries Nucleic Acids Research READ
IRRI Naredo, M.E.B., Mercado, S.M.Q., Banaticla-Hilario, M.C.N., Berdos, M.L., Rodriguez, M.A., McNally, K.L., Sackville Hamilton, N. Genetic diversity patterns in ex situ collections of Oryza officinalis wall. ex watt revealed by morphological and microsatellite markers. Genetic Resources and Crop Evolution READ
IRRI Catolos, M., Sandhu, N., Dixit, S., Shamsudin, N.A.A., Naredo, M.E.B., McNally, K.L., Henry, A., Diaz, M.G., Kumar, A. Genetic loci enhancing grain yield and root development under variable rice cultivation conditions. Frontiers of Plant Science READ
IRRI Whitehouse, K.J., Hay, F.R., Ellis, R.H. High-temperature stress during drying improves subsequent rice (Oryza sativa L.) seed longevity. Seed Science Research READ
IRRI Lee, J.S., Kwak, J., Yoon, M.R., Lee, J.S., Hay F.R. Contrasting tocol ratios associated with seed longevity in rice variety groups. Seed Science Research READ
IRRI Timple, S.E., Hay, F.R. High-temperature drying of seeds of wild Oryza species intended for long-term storage. Seed Science and Technology READ
AfricaRice Monat, C., Pera, B., Ndjiondjop, M.N., Sow, M., Tranchant-Dubreuil, C., Bastianelli, L., Ghesquière, A., Sabot, F. De novo assemblies of three Oryza glaberrima accessions provide first insights about pangenome of African rice. Genome Biology and Evolution Advance READ
AfricaRice Kam, H., Ndjiondjop, M.N., Sanou, J., Sow, M., Ouedraogo, I., Laing, M. Diversity assessment and geographical variability of rice landraces collected from Burkina Faso. International Journal of Development and Sustainability READ
AfricaRice Kam, K., Ndjiondjop, M.N., Liang, M.D., Ahmadi, N. Molecular characterisation and diversity analysis of burkina faso rice landraces using 23 microsatellite markers and establishment of a core collection. International Journal of Current Research READ
AfricaRice Ndjiondjop, M.N., Semagn, K., Gouda, A.C., Kpeki, S.B., Dro Tia, D., Sow, M., Goungoulou, A., Sie, M., Perrier, X., Ghesquiere, A., Warburton, M.L. Genetic variation and population structure of oryza glaberrima and development of a mini-core collection using DArTseq. Frontiers in PLant Science READ
CIAT Lozano, I., Leiva, A. M., Jimenez, J., Fernandez, E., Carvajal-Yepes, M., Cuervo, M., Cuellar, W. J. Resolution of cassava-infecting alphaflexiviruses: Molecular and biological characterization of a novel group of potexviruses lacking the TGB3 gene. Virus Research READ
Bioversity Max Ruas, V. Guignon, G. Sempere, J. Sardos, Y. Hueber, H. Duvergey, A. Andrieu, R. Chase, C. Jenny, T. Hazekamp, B. Irish, K. Jelali, J. Adeka, T. Ayala-Silva, C.P. Chao, J. Daniells, B. Dowiya, B. Effa effa, L. Gueco, L. Herradura, L. Ibobondji, E. Kempenaers, J. Kilangi, S. Muhangi, P. Ngo Xuan, J. Paofa, C. Pavis, D. Thiemele, C. Tossou, J. Sandoval, A. Sutanto, G. Vangu Paka, G. Yi, I. Van den houwe, N. Roux, M. Rouard MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Database READ
Bioversity Al-Idrus, A., Carpentier, S.C., Ahmad, M.T., Panis, B., Mohamed, Z. Elucidation of the compatible interaction between banana and Meloidogyne incognita via high-throughput proteome profiling. PLoS ONE READ
Bioversity De Clerck, C., Crew, K., Van den houwe, I., McMichael, L., Berhal, C., Lassois, L., Haissam Jijakli, M., Roux, N., Thomas, J. and Massart, S. Lessons learned from the virus indexing of Musa germplasm: insights from a multiyear collaboration. Annals of Applied Biology READ
CIMMYT Reynolds, M.P.,Pask, A., Hoppitt, W.J.E., Sonder, K., Sukumaran, S., Molero, G., Saint Pierre, C.,Payne, T.S., Singh, R.P., Braun, H.J., Gonzalez, F.G., Terrile, I.I., Barma, N.C.D, Abdul Hakim, M., He Zhonghu, Zheru Fan, Novoselovic, D., Maghraby, M., Gad, K.I.M., Galal, E.G., Hagras, A., Mohamed M. Mohamed, Morad, A.F.A., Kumar, U., Gyanendra Pratap Singh, Naik, R., Kalappanavar, I.K., Biradar, S., Prasad, S.V.S., Chatrath, R., Sharma, I., Panchabhai, K., Sohu, V.S., Gurvinder Singh Mavi, Vinod Kumar Mishra, Balasubramaniam, A., Jalal Kamali, M.R., Khodarahmi, M., Dastfal, M., Tabib Ghaffary, S.M., Jafarby, J., Nikzad, A.R., Moghaddam, H.A., Hassan Ghojogh, Mehraban, A., Solís Moya, E., Camacho Casas, M.A., Figueroa López, P., Ireta Moreno, J., Alvarado Padilla, J.I., Borbón Gracia, A., Torres, A., Quiche, YN., Upadhyay, S.R., Pandey, D., Imtiaz, M., Rehman, M.U., Hussain, M., Hussain, M., Ud-din, R., Qamar, M., Muhammad Kundi, Mujahid, M.Y., Ahmad, G., Khan, A.J., Mehboob Ali Sial, Mustatea, P., Well, E. von, Ncala, M., Groot, S. de, H. Strategic crossing of biomass and harvest index—source and sink—achieves genetic gains in wheat. Euphytica READ
CIP Vollmer, R., Villagaray, R., Cárdenas, J., Castro, M., Chávez, O., Anglin, N. and Ellis, D. A large-scale viability assessment of the potato cryobank at the International Potato Center (CIP). In Vitro Cellular & Developmental Biology - Plant READ
CIP Gálvez, J., Tai, H.,Anglin, N., Gardner, K., Ellis, D., Strömvik, M. Understanding potato with the help of genomics. AIMS Agriculture and Food READ
CIP Ramírez, D.A.,Gavilán, C., Barreda, C., Condori, B., Rossel, G., Mwanga, R.O.M., Andrade, M., Monneveu, P., Anglin⁺, N.L.D., Ellis⁺, Q. Characterizing the diversity of sweetpotato through growth parameters and leaf traits: Precocity and light use efficiency as important ordination factors. South African Journal of Botany READ
CIP Zheng, Y., Gao, S., Padmanabhan, Li, R., Galvez, M., Gutierrez, D., Fuentes, S., ShuLing, K., Kreuze, J., Fei, VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs. Virology READ
CIP Ramírez, D., Kreuze, J., Amoros, W., Valdivia-Silva, J.,Ranck, J., Garcia, S., Salas, E.,Yactayo, W. Extreme salinity as a challenge to grow potatoes under Mars-like soil conditions: targeting promising genotypes. International Journal of Astrobiology READ
ICARDA Kabbaj, H., Sall, A.T., Al-Abdallat, A., Geleta, M., Amri, A., Filali-Maltouf, A., Belkadi, B., Ortiz, R., Bassi, F.M. Genetic diversity within a global panel of durum wheat (Triticum durum) landraces and modern germplasm reveals the history of alleles exchange. Frontier Plant Science READ
ICARDA Zaim, M., El Hassouni, K., Gamba, F.F., Filali-Maltouf, A., Belkadi, B., Sourour, A., Amri, A., Nachit, M., Taghouti, M., Bassi, F.M. Wide crosses of durum wheat (Triticum durum Desf.) reveal good disease resistance, yield stability, and industrial quality across Mediterranean sites. Field Crops Research READ
ICARDA Lala, S., Amri, A., Maxted, N. Towards the conservation of crop wild relative diversity in North Africa: Checklist, prioritisation and inventory. Genetic Resources and Crop Evolution READ
ICARDA Amezrou, R., Gyawali, S., Belqadi, L., Chao, S., Arbaoui, M., Mamidi, S, Rehman, S., Sreedasyam, A., Verma, R.P.S. Molecular and phenotypic diversity of ICARDA spring barley (Hordeum vulgare L.) collection. Genetic Resources and Crop Evolution READ
ICARDA Delventhal, R., Rajaraman, J., Stefanato, F., Rehman, S., Aghnoum, R., McGrann, G., Bolger, M., Usadel, B., Hedley, P., Boyd, L., Niks, R. E., Schweizer, P., Schaffrath, U. A comparative analysis of non-host resistance across the two Triticeae crop species wheat and barley. BMC Plant Biology READ
ICARDA Gyawali, S., Verma, R.P.S., Kumar, S., Bhardwaj, S.C., Gangwar, O., Rajan, S., Shekhawat, P., Rehman, S., Sharma-Poudyal, D. Seedling and adult-plant stage resistance of a world collection of barley genotypes to stripe rust. Journal of Phytopathology READ
ICARDA Chaabane, R., Saidi, A., Bchini, H., Sassi, M., Rouissi, M., Naceur, A.B., Sayouri, S., Naceur, M.B., Masanori, I., Bari, A., Amri, A. Identification of durum wheat salt tolerance sources in elite Tunisian varieties and a targeted FIGS subset from ICARDA gene bank: Non-destructive and easy way. American Scientific Research Journal for Engineering, Technology, and Sciences (ASRJETS) READ
ICRAF Bazié, P., Ky-Dembele, C., Jourdan, C., Roupsard, O., Zombré, G., & Bayala, J Synchrony in the phenologies of fine roots and leaves of Vitellaria paradoxa in different land uses of Burkina Faso. Agroforestry Systems READ
ICRAF Tsobeng, A., Asaah, E., Tchoundjeu, Z., Van Damme, P., Ofori, O., Jamnadass, R. Growth, flowering and fruiting of stecklings, grafts and seedlings of Allanblackia floribunda Oliver (Clusiaceae). Agroforestry Systems READ
ICRAF Roshetko, J.M., Dawson I.K., Urquiola, J., Lasco, R.D., Leimona, B., Weber, J.C., Bozzano, M., Lillesø, J.P.B., Graudal, L., Jamnadass, R. To what extent are genetic resources considered in environmental service provision? A case study based on trees, carbon sequestration and the Clean Development Mechanism. Climate and Development READ
ICRAF Gachuiri, A.N., Carsan, S., Karanja, E., Parmutia, M., Kuyah, S. Diversity and importance of local fodder tree and shrub resources in mixed farming systems of central Kenya. Forests, Trees and Livelihoods READ
ICRAF Muthai, K., Karori, M., Muchugi, A., Indieka, A.,Dembele, C., Mng’omba, S., Jamnadass, R. Nutritional variation in baobab (Adansonia digitata L.) fruit pulp and seeds based on Africa geographical regions. Journal of Food Science and Nutrition READ
ICRAF Minja, R.R., Kimaro, A.A., Mpanda, M., Moshy, S., Mwaijande, V.,Ngereza,
A., Ambrose, J., Ndee, A., Kihula, B., Nyalusi, G.
Effects of rootstock type and scion cultivar on
grafting success and growth of mango
(Mangifera indica L.) seedlings.
Journal of Experimental Agriculture International READ
ICRISAT Upadhyaya, H.D., Reddy, K. N., Ahmed, M., Kumar, V., Gumma, M. K., Ramachandran, S. Geographical distribution of traits and diversity in the world collection of pearl millet [Pennisetum glaucum (L.) R. Br., synonym: Cenchrus americanus (L.) Morrone] landraces conserved at the ICRISAT genebank. Genetic Resources and Crop Evolution READ
ICRISAT Purushothaman, R., Krishnamurthy, L., Upadhyaya, H., Vadez, V., Varshney, R. Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea. Functional Plant Biology READ
ICRISAT Purushothaman, R., Krishnamurthy, L., Upadhyaya, H., Vadez, V., Varshney, R. Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field Crops Research READ
ICRISAT Pandey, M., Agarwal, G., Kale, S., Clevenger, J., Nayak, S., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H., Vishwakarma, M.,Leal-Bertioli, S., Liang, X., Bertioli, D., Guo, B.,Jackson, S., Ozias-Akins, P., Varshney, R. Development and evaluation of a high density genotyping ‘Axiom_Arachis’ array with 58 K SNPs for accelerating genetics and breeding in groundnut. Scientific Reports READ
ICRISAT Upadhyaya H. D., Sangam L. Dwivedi, Mani Vetriventhan, L. Krishnamurthy, and Shailesh Kumar Singh Post-flowering drought tolerance using managed stress trials, adjustment to flowering, and mini core collection in sorghum. Crop science READ
ICRISAT Srivastava, R., Upadhyaya, H., Kumar, R., Daware, A., Basu, U., Shimray, P., Tripathi, S., Bharadwaj, C., Tyagi, A., Parida, S. A multiple QTL-Seq strategy delineates potential genomic loci governing flowering time in chickpea. READ
ICRISAT Yadav, O.P., Upadhyaya, H.D., Reddy, K.N., Jukanti, A.K., Pandey, S., Tyagi, R.K. Genetic resources of pearl millet: Status and utilization. Indian Journal of Plant Genetic Resources READ
ICRISAT Varshney, R., Saxena, R.,Upadhyaya, H., Khan, A., Yu, Y., Kim, C., Rathore, A., Kim, D., Kim, J., An, S., Kumar, V., Anuradha, G., Narasimhan Yamini, K., Zhang, S., Muniswamy, W., Kim, J., Penmetsa, R., von Wettberg, E., Datta, S. Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics READ
ICRISAT A.G. Vijayakumar, Ishwar Boodi, P.M. Gaur and H.D. Upadhyaya Genetic diversity for yield and its component traits in chickpea (Cicer arietinum L.). Electronic Journal of Plant Breeding READ
ICRISAT Upadhyaya, H., Bajaj, D.,Srivastava, R., Daware, A., Basu, U., Tripathi, S.,Bharadwaj, C.,Tyagi, A., Parida, S. Genetic dissection of plant growth habit in chickpea. Functional & Integrative Genomics READ
ICRISAT Dwivedi, S., Lammerts van Bueren, E., Ceccarelli, S., Grando, S., Upadhyaya, H., Ortiz, R. Diversifying food systems in the pursuit of sustainable food production and healthy diets. Trends in Plant Science READ
ICRISAT Ramakrishnan, M., Antony Ceasar,S., Vinod,K. K. V., Duraipandiyan,V. T. P., Ajeesh Krishna,T. P., Upadhyaya, H., Al-Dhabi, N. A., Ignacimuthu, S. Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis. Plos One READ
ICRISAT Yol, E., Furat, S., Upadhyaya, H., Uzun, B. Characterization of groundnut (Arachis hypogaea L.) collection using quantitative and qualitative traits in the Mediterranean Basin. Journal of Integrative Agriculture READ
ICRISAT Shimray, P.W., Bajaj, D., Srivastava, R., Daware, Av, Upadhyaya, H.D., Kumar, R., Bharadwaj, C., Tyagi, A.K., Parida, S.K. Identifying transcription factor genes associated with yield traits in chickpea. Plant Molecular Biology Reporter READ
ICRISAT Varshney, R., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., Zhang, H., Zhao, Y., Wang, X., Rathore, A., Srivastava, R., Chitikineni, A.,Fan, G., Bajaj, P., Punnuri, S.,Gupta, S.K.,Wang, H., Jiang, Y., Couderc, M., Katta, M., Paudel, D.,Mungra,K.D. , Chen, W., Harris-Shultz, K., Garg, V., Desai, N., Doddamani, D., Kane, N., Conner, J., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O., Berthouly-Salazar, C., Hamidou, F.,Wang, J., Liang, X., Clotault, J., Upadhyaya, H., Cubry, P., Rhoné, B., Gueye, M., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala,R.S.,Singh, B., Yadav, R., Lyons, E., Datta, S., Hash, C., Devos, K., Buckler, E., Bennetzen, J., Paterson, A., Akins, P., Grando, S.,Wang, J., Mohapatra, T., Weckwerth, W., Reif, J.,Liu, X., Vigouroux, Y., Xu, X. Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology READ
ICRISAT Upadhyaya, H.D., Kothapally, N.R., Vetriventhan, M., Mohammedd, I.A., Gumma, M.K., Mulinti, T.R.,Singh, S.K. Sorghum germplasm from West and Central Africa maintained in the ICRISAT
genebank: status, gaps, and diversity.
The Crop Journal READ
ICRISAT Falalou, H., Sani, A., Hassane, B., Falke, A., Hari, U. Abiotic stresses tolerance and nutrients contents in groundnut, pearl millet and sorghum mini core germplasm for food and nutrition security. Indian Journal of Plant Genetic Resources READ
ICRISAT Upadhyaya,H. D.,Reddy, K. N.,Pattanashetti, Reddy, S.,Kumar, V.,Ramachandran, S. Identification of promising sources for fodder traits in the world collection of pearl millet at the ICRISAT genebank. Plant Genetic Resources READ
ILRI Negawo, A., Teshome, A., Kumar, A., Hanson, J., Jones, C. Opportunities for Napier Grass (Pennisetum purpureum) Improvement Using Molecular Genetics. Agronomy READ

The Genebanks

The 11 CGIAR genebanks currently conserve 730,000 of cereals and grain legumes, forage crops, tree species, root and tuber crops, bananas and crop wild relatives.

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